genera heatmap analysis Search Results


genera heatmap analysis  (CD Genomics)
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CD Genomics genera heatmap analysis
In the <t>heatmap</t> analysis the vertical clustering indicates the similarity of the abundance between different genera. The shorter the distance between the two genera, the more similar abundance between the samples. In the horizontal clustering, the closer and shorter of the branch length between the samples, the more similarity of the abundance.
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In the heatmap analysis the vertical clustering indicates the similarity of the abundance between different genera. The shorter the distance between the two genera, the more similar abundance between the samples. In the horizontal clustering, the closer and shorter of the branch length between the samples, the more similarity of the abundance.

Journal: Scientific Reports

Article Title: The effects of atrazine on the microbiome of the eastern oyster: Crassostrea virginica

doi: 10.1038/s41598-020-67851-4

Figure Lengend Snippet: In the heatmap analysis the vertical clustering indicates the similarity of the abundance between different genera. The shorter the distance between the two genera, the more similar abundance between the samples. In the horizontal clustering, the closer and shorter of the branch length between the samples, the more similarity of the abundance.

Article Snippet: “According to the taxonomic composition and relative abundance of each sample, the genera heatmap analysis was carried out to extract the species at each taxonomic level and plotted using the R language tools, the heatmap clustering analysis was conducted at the level of phylum, class, order, family, genus and species respectively” (CD Genomics).

Techniques: